Stem-loop mmu-mir-363

Accession

MI0000765

Symbol

MGI: Mir363

Description

Mus musculus mmu-mir-363 precursor miRNA mir-363

Gene
family

RF01898; mir-363

Literature search

36 open access papers mention mmu-mir-363
(238 sentences)

Sequence

98033 reads, 324 reads per million, 92 experiments

uguuauCAGGUGGAACACGAUGCAAUUUugguugguguaauaggaggaaAAUUGCACGGUAUCCAUCUGUAaacc
.(((..((((((((((.((.(((((((((..(((......)))....))))))))))))).))))))))..))).

Structure

u   au        -  A  A         --gg   gu 
 guu  CAGGUGGA AC CG UGCAAUUUu    uug  g
 |||  |||||||| || || |||||||||    |||   
 caa  GUCUACCU UG GC ACGUUAAaa    gau  u
c   AU        A  -  -         ggag   aa 

Annotation confidence High

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context

chrX: 52741693-52741767 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from mmu-mir-363

Mature mmu-miR-363-5p

• Accession: MIMAT0017076
• Description: Mus musculus mmu-miR-363-5p mature miRNA
• Sequence: 7 - CAGGUGGAACACGAUGCAAUUU - 28
• Evidence: experimental ; Illumina [4]

Mature mmu-miR-363-3p

• Accession: MIMAT0000708
• Description: Mus musculus mmu-miR-363-3p mature miRNA
• Sequence: 50 - AAUUGCACGGUAUCCAUCUGUA - 71
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267