miRBase entry: 16274478

Identification of clustered microRNAs using an ab initio prediction method

PubMed ID 16274478
Authors Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
Journal BMC Bioinformatics
Volume 6
Pages 267

There are 166 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
hsa-mir-362 MI0000762 208 chrX 50008964 50009028 + High
mmu-mir-362 MI0000763 231 X 7108221 7108285 - High
hsa-mir-363 MI0000764 532 chrX 134169378 134169452 - High
mmu-mir-363 MI0000765 646 X 51830570 51830644 - High
hsa-mir-367 MI0000775 4 chr4 112647874 112647941 - -
hsa-mir-369 MI0000777 261 chr14 101065598 101065667 + High
hsa-mir-370 MI0000778 138 chr14 100911139 100911213 + High
hsa-mir-374a MI0000782 1036 chrX 74287286 74287357 - High
hsa-mir-376a-1 MI0000784 91 chr14 101040782 101040849 + High
hsa-mir-377 MI0000785 94 chr14 101062050 101062118 + High
hsa-mir-379 MI0000787 331 chr14 101022066 101022132 + High
hsa-mir-381 MI0000789 109 chr14 101045920 101045994 + High
hsa-mir-382 MI0000790 205 chr14 101054306 101054381 + High
mmu-mir-376a MI0000793 1757 12 109690215 109690282 + High
mmu-mir-377 MI0000794 669 12 109706944 109707011 + High
mmu-mir-379 MI0000796 1971 12 109675494 109675559 + High
mmu-mir-382 MI0000799 1104 12 109700205 109700280 + High
mmu-mir-133b MI0000821 2787 1 20752993 20753111 + High
mmu-mir-409 MI0001160 686 12 109709592 109709670 + High
mmu-mir-410 MI0001161 1045 12 109710149 109710229 + High
mmu-mir-376b MI0001162 809 12 109689892 109689973 + High
mmu-mir-412 MI0001164 104 12 109709723 109709802 + High
mmu-mir-370 MI0001165 299 12 109584692 109584770 + High
hsa-mir-20b MI0001519 152 chrX 134169809 134169877 - High
mmu-mir-434 MI0001526 2508 12 109560940 109561033 + High
hsa-mir-450a-1 MI0001652 777 chrX 134540341 134540431 - High
hsa-mir-329-1 MI0001725 54 chr14 101026785 101026864 + High
hsa-mir-329-2 MI0001726 55 chr14 101027100 101027183 + High
hsa-mir-451a MI0001729 5013 chr17 28861369 28861440 - High
mmu-mir-451a MI0001730 9802 11 77963996 77964067 + Medium
hsa-mir-452 MI0001733 581 chrX 151959628 151959712 - High
hsa-mir-409 MI0001735 122 chr14 101065300 101065378 + High
hsa-mir-410 MI0002465 35 chr14 101065912 101065991 + High
hsa-mir-487a MI0002471 33 chr14 101052446 101052525 + High
hsa-mir-493 MI0003132 96 chr14 100869060 100869148 + High
hsa-mir-432 MI0003133 163 chr14 100884483 100884576 + High
hsa-mir-494 MI0003134 45 chr14 101029634 101029714 + High
hsa-mir-193b MI0003137 1060 chr16 14303967 14304049 + High
hsa-mir-450a-2 MI0003187 847 chrX 134540508 134540607 - High
hsa-mir-503 MI0003188 405 chrX 134546328 134546398 - High
mmu-mir-489 MI0003476 6 6 3721897 3722003 - -
rno-mir-489 MI0003477 30 chr4 28659523 28659628 - High
rno-mir-383 MI0003478 965 chr16 57519675 57519748 + High
rno-mir-207 MI0003479 3 chr5 57028859 57028936 + -
rno-mir-501 MI0003480 20 chrX 16117874 16117957 + High
rno-mir-361 MI0003481 130 chrX 84708911 84708980 - High
rno-mir-215 MI0003482 37714 None None High
rno-mir-224 MI0003483 23 chrX 152223754 152223835 - High
rno-mir-370 MI0003486 42 chr6 133739916 133739994 + High
rno-mir-377 MI0003487 22 chr6 133890690 133890761 + High
rno-mir-412 MI0003488 26 chr6 133893571 133893640 + High
rno-mir-1 MI0003489 205 chr18 2054933 2055019 - High
rno-mir-133b MI0003490 538 chr9 26795649 26795732 + High
mmu-mir-485 MI0003492 534 12 109701336 109701408 + High
hsa-mir-539 MI0003514 83 chr14 101047321 101047398 + High
hsa-mir-544a MI0003515 13 chr14 101048658 101048748 + High
hsa-mir-545 MI0003516 223 chrX 74287104 74287209 - High
mmu-mir-546 MI0003517 41 10 126834309 126834429 + -
mmu-mir-540 MI0003518 247 12 109552514 109552580 + High
mmu-mir-543 MI0003519 445 12 109683692 109683767 + High
mmu-mir-539 MI0003520 144 12 109694563 109694636 + High
mmu-mir-541 MI0003521 2088 12 109708843 109708932 + High
mmu-mir-542 MI0003522 358 X 52138280 52138364 - High
mmu-mir-547 MI0003523 722 X 67031980 67032057 - High
rno-mir-540 MI0003524 48 chr6 133706202 133706285 + High
rno-mir-543 MI0003525 60 chr6 133866660 133866739 + High
rno-mir-539 MI0003526 46 chr6 133877832 133877907 + High
rno-mir-541 MI0003527 3100 chr6 133892655 133892744 + High
rno-mir-542-1 MI0003528 80 chrX 158152146 158152224 + High
hsa-mir-487b MI0003530 85 chr14 101046455 101046538 + High
mmu-mir-367 MI0003531 52 3 127339382 127339456 + -
mmu-mir-494 MI0003532 468 12 109681752 109681836 + High
mmu-mir-376c MI0003533 361 12 109689152 109689237 + High
mmu-mir-487b MI0003534 285 12 109693767 109693848 + High
mmu-mir-369 MI0003535 677 12 109709852 109709930 + High
mmu-mir-20b MI0003536 135 X 51830990 51831069 - High
mmu-mir-450a-2 MI0003537 246 X 52137176 52137244 - High
mmu-mir-503 MI0003538 1690 X 52142861 52142931 - High
mmu-mir-291b MI0003539 561 7 3268156 3268234 + High
rno-mir-493 MI0003540 36 chr6 133699509 133699592 + High
rno-mir-379 MI0003541 102 chr6 133857700 133857784 + High
rno-mir-494 MI0003542 282 chr6 133864370 133864452 + High
rno-mir-376c MI0003543 20 chr6 133872439 133872522 + High
rno-mir-376b MI0003544 74 chr6 133873095 133873180 + High
rno-mir-376a MI0003545 75 chr6 133873605 133873686 + High
rno-mir-381 MI0003546 39 chr6 133876615 133876675 + High
rno-mir-487b MI0003547 143 chr6 133877124 133877205 + High
rno-mir-382 MI0003548 5035 chr6 133884178 133884257 + High
rno-mir-485 MI0003549 11404 chr6 133885299 133885377 + High
rno-mir-409a MI0003550 263 chr6 133893419 133893495 + High
rno-mir-369 MI0003551 182 chr6 133893693 133893771 + High
rno-mir-374 MI0003552 68 chrX 74443648 74443715 - High
rno-mir-363 MI0003553 75 chrX 140117098 140117184 - High
rno-mir-20b MI0003554 38 chrX 140117518 140117589 - High
rno-mir-503-1 MI0003555 35 chrX 158148476 158148546 + High
hsa-mir-542 MI0003686 402 chrX 134541341 134541437 - High
rno-mir-503-2 MI0031773 35 chrX 158584857 158584927 + High
rno-mir-542-2 MI0031781 80 chrX 158158885 158158963 + High
rno-mir-542-3 MI0031782 80 chrX 158588529 158588607 + High
hsa-let-7a-1 MI0000060 46519 chr9 94175957 94176036 + High
hsa-let-7a-2 MI0000061 46265 chr11 122146522 122146593 - High
hsa-let-7a-3 MI0000062 46706 chr22 46112749 46112822 + High
hsa-let-7b MI0000063 27396 chr22 46113686 46113768 + High
hsa-let-7c MI0000064 15711 chr21 16539828 16539911 + High
hsa-let-7d MI0000065 4366 chr9 94178834 94178920 + High
hsa-let-7e MI0000066 5118 chr19 51692786 51692864 + High
hsa-let-7f-1 MI0000067 65280 chr9 94176347 94176433 + High
hsa-let-7f-2 MI0000068 65395 chrX 53557192 53557274 - High
hsa-mir-17 MI0000071 12840 chr13 91350605 91350688 + High
hsa-mir-19b-2 MI0000075 12558 chrX 134169671 134169766 - High
hsa-mir-20a MI0000076 6826 chr13 91351065 91351135 + High
hsa-mir-106a MI0000113 2817 chrX 134170198 134170278 - High
mmu-let-7g MI0000137 17749 9 106056039 106056126 + High
mmu-let-7i MI0000138 16255 10 122821545 122821629 - High
mmu-mir-1a-1 MI0000139 20001 2 180030841 180030917 + High
mmu-mir-188 MI0000230 106 X 7114228 7114295 - High
mmu-let-7d MI0000405 18752 13 48689488 48689590 - High
mmu-mir-106a MI0000406 118 X 51831380 51831444 - High
hsa-let-7g MI0000433 6904 chr3 52268278 52268361 - High
hsa-let-7i MI0000434 7403 chr12 62603686 62603769 + High
hsa-mir-1-2 MI0000437 5211 chr18 21829004 21829088 - High
hsa-mir-188 MI0000484 115 chrX 50003503 50003588 + High
mmu-mir-19b-2 MI0000546 2410 X 51830860 51830943 - High
mmu-let-7a-1 MI0000556 54921 13 48691655 48691748 - High
mmu-let-7a-2 MI0000557 54880 9 41448012 41448107 + High
mmu-let-7b MI0000558 17501 15 85591520 85591604 + High
mmu-let-7c-1 MI0000559 47495 16 77396545 77396638 + High
mmu-let-7c-2 MI0000560 47445 15 85590804 85590898 + High
mmu-let-7e MI0000561 4644 17 18050614 18050706 + High
mmu-let-7f-1 MI0000562 107727 13 48691305 48691393 - High
mmu-let-7f-2 MI0000563 108671 X 150695342 150695424 + High
mmu-mir-20a MI0000568 1950 14 115281589 115281695 + High
rno-mir-323 MI0000591 1700 chr6 133861199 133861284 + High
mmu-mir-323 MI0000592 389 12 109678942 109679027 + High
rno-let-7d MI0000601 1221 chr17 16419980 16420077 + High
rno-mir-329 MI0000604 103 chr6 133862168 133862264 + High
mmu-mir-329 MI0000605 312 12 109679915 109680011 + High
rno-mir-20a MI0000638 85 chr15 100180334 100180418 + High
hsa-mir-1-1 MI0000651 5442 chr20 62554306 62554376 + High
mmu-mir-1a-2 MI0000652 19830 18 10785481 10785552 - High
mmu-mir-17 MI0000687 2249 14 115281103 115281186 + High
hsa-mir-376c MI0000776 330 chr14 101039690 101039755 + High
hsa-mir-323a MI0000807 46 chr14 101025732 101025817 + High
rno-let-7a-1 MI0000827 3545 chr17 16417853 16417946 + High
rno-let-7a-2 MI0000828 3492 chr8 45753264 45753359 + High
rno-let-7b MI0000829 1369 chr7 126590627 126590711 + High
rno-let-7c-1 MI0000830 4658 chr11 16052873 16052966 + High
rno-let-7c-2 MI0000831 5130 chr7 126590212 126590306 + High
rno-let-7e MI0000832 454 chr1 59704381 59704473 + High
rno-let-7f-1 MI0000833 10069 chr17 16418221 16418309 + High
rno-let-7f-2 MI0000834 9992 chrX 21583272 21583354 + High
rno-let-7i MI0000835 3479 chr7 66802731 66802815 + High
rno-mir-17-1 MI0000845 120 chr15 100179879 100179962 + High
rno-mir-19b-2 MI0000848 177 chrX 140117379 140117474 - -
rno-mir-421 MI0001423 93 chrX 74443492 74443570 - Medium
hsa-mir-376b MI0002466 139 chr14 101040436 101040535 + High
hsa-mir-376a-2 MI0003529 68 chr14 101040069 101040148 + High
hsa-mir-421 MI0003685 455 chrX 74218377 74218461 - High
mmu-mir-421 MI0005496 144 X 102616527 102616602 - High
rno-mir-17-2 MI0006131 89 chrX 140117891 140117968 - High
rno-mir-188 MI0006134 28 chrX 16110270 16110349 + Medium
mmu-mir-1b MI0006283 21 18 10785446 10785567 + High
hsa-mir-323b MI0014206 21 chr14 101056219 101056300 + High
mmu-let-7j MI0021908 37 3 139734010 139734131 + -
mmu-let-7k MI0022352 67 5 147219999 147220108 - -
rno-let-7g MI0030347 2878 chr8 114874457 114874544 + High



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