Stem-loop rno-mir-493

Accession

MI0003540

Description

Rattus norvegicus rno-mir-493 precursor miRNA

Literature search

7 open access papers mention rno-mir-493
(11 sentences)

Sequence

9951 reads, 36 reads per million, 272 experiments

ggccuccagggccUUGUACAUGGUAGGCUUUCAUUcauuguuugcacauucggUGAAGGUCUACUGUGUGCCAGgcccugugcc
(((...((((((((.((((((((((((((((((((...(((....)))...)))))))))))))))))))).)))))))).)))

Structure

   cuc        U                    cau   u 
ggc   cagggccU GUACAUGGUAGGCUUUCAUU   ugu u
|||   |||||||| ||||||||||||||||||||   |||  
ccg   gucccgGA CGUGUGUCAUCUGGAAGUgg   aca g
   --u        C                    cuu   c 

Annotation confidence High

Genome context

chr6: 133699509-133699592 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from rno-mir-493

Mature rno-miR-493-5p

• Accession: MIMAT0017217
• Description: Rattus norvegicus rno-miR-493-5p mature miRNA
• Sequence: 14 - UUGUACAUGGUAGGCUUUCAUU - 35
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-493-3p

• Accession: MIMAT0003191
• Description: Rattus norvegicus rno-miR-493-3p mature miRNA
• Sequence: 54 - UGAAGGUCUACUGUGUGCCAG - 74
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267