Stem-loop mmu-mir-489

Accession

MI0003476

Symbol

MGI: Mir489

Description

Mus musculus mmu-mir-489 precursor miRNA mir-489

Gene
family

RF00698; mir-489

Literature search

24 open access papers mention mmu-mir-489
(292 sentences)

Sequence

136 reads, 2 reads per million, 19 experiments

acugcugcaguggcagcuugguUGUCAUAUGUGUGAUGACACUUUCUaaagucuuccagAAUGACACCACAUAUAUGGCAGCuaaacuguuacauggaacaacaagu
..((.(.(((((((((.((((((((((((((((((.((.((..((((..........)))))).)).)))))))))))))))))).))))))).)).).))......

Structure

----ac  c g  -       c                  A  A  CU    aaag 
      ug u ca guggcag uugguUGUCAUAUGUGUG UG CA  UUCU    u
      || | || ||||||| |||||||||||||||||| || ||  ||||     
      ac a gu cauuguc aauCGACGGUAUAUACAC AC GU  AAga    c
ugaaca  a g  a       a                  C  A  --    ccuu 

Annotation confidence Low

Genome context

chr6: 3721897-3722003 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-489

Mature mmu-miR-489-3p

• Accession: MIMAT0003112
• Description: Mus musculus mmu-miR-489-3p mature miRNA
• Sequence: 60 - AAUGACACCACAUAUAUGGCAGC - 82
• Evidence: experimental ; cloned [2], Illumina [3-4]

Mature mmu-miR-489-5p

• Accession: MIMAT0022704
• Description: Mus musculus mmu-miR-489-5p mature miRNA
• Sequence: 23 - UGUCAUAUGUGUGAUGACACUUUCU - 47
• Evidence: not_experimental

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267