Stem-loop mmu-mir-546

Accession

MI0003517

Symbol

MGI: Mir546

Description

Mus musculus mmu-mir-546 precursor miRNA

Literature search

4 open access papers mention mmu-mir-546
(5 sentences)

Sequence

51 reads, 4 reads per million, 19 experiments

ccucucuucccaaaacuaaacaggaucuaucAUGGUGGCACGGAGUCagcuagauguugucucuugcuaucccugugcuaguuccauguuuuagaagcaaagugauacuggggaggagagg
(((((((((((...(((((((((((.(((.((((((((((.((((.((((.....)))).)))))))))))...))).))).))).))))).........))).......)))))))))))

Structure

           ----aaa   ---------     -   u   u   ---       C    U    u 
ccucucuuccc       acu         aaaca gga cua cAU   GGUGGCA GGAG Cagc a
|||||||||||       |||         ||||| ||| ||| |||   ||||||| |||| |||| g
ggagaggaggg       uga         uuugu ccu gau gug   cuaucgu ucuc guug a
           gucauag   aacgaagau     a   u   c   ucc       -    u    u 

Annotation confidence Low

Genome context

chr10: 126998440-126998560 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-546

Mature mmu-miR-546

• Accession: MIMAT0003166
• Description: Mus musculus mmu-miR-546 mature miRNA
• Sequence: 32 - AUGGUGGCACGGAGUC - 47
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267