Stem-loop mmu-mir-362

Accession

MI0000763

Symbol

MGI: Mir362

Description

Mus musculus mmu-mir-362 precursor miRNA mir-362

Gene
family

RF04267; mir-362

Literature search

8 open access papers mention mmu-mir-362
(9 sentences)

Sequence

37195 reads, 138 reads per million, 102 experiments

cucgAAUCCUUGGAACCUAGGUGUGAAUgcugcuucagugcAACACACCUGUUCAAGGAUUCAaa
...(((((((((((...((((((((..(((.........))).)))))))))))))))))))...

Structure

cuc           ACC        AA   ugc 
   gAAUCCUUGGA   UAGGUGUG  Ugc   u
   |||||||||||   ||||||||  |||   u
   CUUAGGAACUU   GUCCACAC  Acg   c
aaA           ---        -A   uga 

Annotation confidence Medium

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3].

Genome context

chrX: 7241982-7242046 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from mmu-mir-362

Mature mmu-miR-362-5p

• Accession: MIMAT0000706
• Description: Mus musculus mmu-miR-362-5p mature miRNA
• Sequence: 5 - AAUCCUUGGAACCUAGGUGUGAAU - 28
• Evidence: experimental ; cloned [1,3], MPSS [2], Illumina [4-5]

Mature mmu-miR-362-3p

• Accession: MIMAT0004684
• Description: Mus musculus mmu-miR-362-3p mature miRNA
• Sequence: 42 - AACACACCUGUUCAAGGAUUCA - 63
• Evidence: experimental ; cloned [3], Illumina [4-5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771


5. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267