Stem-loop rno-mir-369

Accession

MI0003551

Description

Rattus norvegicus rno-mir-369 precursor miRNA

Literature search

8 open access papers mention rno-mir-369
(12 sentences)

Sequence

132609 reads, 106 reads per million, 419 experiments

gguacuugaagggAGAUCGACCGUGUUAUAUUCGCuuagcugacuucgAAUAAUACAUGGUUGAUCUUUucucaguauc
((((((.((.((((((((((((((((..((((((...((....)).))))))..)))))))))))))))).))))))))

Structure

      u  a                UA      Cuu  c 
gguacu ga gggAGAUCGACCGUGU  UAUUCG   ag u
|||||| || ||||||||||||||||  ||||||   ||  
cuauga cu uUUUCUAGUUGGUACA  AUAAgc   uc g
      -  c                UA      --u  a 

Annotation confidence Medium

Genome context

chr6: 133893693-133893771 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-369

Mature rno-miR-369-5p

• Accession: MIMAT0003206
• Description: Rattus norvegicus rno-miR-369-5p mature miRNA
• Sequence: 14 - AGAUCGACCGUGUUAUAUUCGC - 35
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-369-3p

• Accession: MIMAT0003207
• Description: Rattus norvegicus rno-miR-369-3p mature miRNA
• Sequence: 49 - AAUAAUACAUGGUUGAUCUUU - 69
• Evidence: experimental ; cloned [2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267