Stem-loop rno-mir-494

Accession

MI0003542

Description

Rattus norvegicus rno-mir-494 precursor miRNA

Literature search

23 open access papers mention rno-mir-494
(349 sentences)

Sequence

3457 reads, 8 reads per million, 302 experiments

ugauacuugaaggagAGGUUGUCCGUGUUGUCUUCUCuuuauuuaugaUGAAACAUACACGGGAAACCUCUuuuuuaguauca
(((((((.((((((((((((.((((((((((.(((((.........)).)))))).))))))).)))))))))))))))))))

Structure

       u            G       -   C   -  uuu 
ugauacu gaaggagAGGUU UCCGUGU UGU UUC UC   a
||||||| |||||||||||| ||||||| ||| ||| ||   u
acuauga uuuuuUCUCCAA GGGCACA ACA AAG ag   u
       -            A       U   -   U  uau 

Annotation confidence High

Genome context

chr6: 133864370-133864452 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-494

Mature rno-miR-494-5p

• Accession: MIMAT0017218
• Description: Rattus norvegicus rno-miR-494-5p mature miRNA
• Sequence: 16 - AGGUUGUCCGUGUUGUCUUCUC - 37
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-494-3p

• Accession: MIMAT0003193
• Description: Rattus norvegicus rno-miR-494-3p mature miRNA
• Sequence: 49 - UGAAACAUACACGGGAAACCUCU - 71
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267