Stem-loop rno-mir-363

Accession

MI0003553

Description

Rattus norvegicus rno-mir-363 precursor miRNA

Literature search

9 open access papers mention rno-mir-363
(25 sentences)

Sequence

18976 reads, 29 reads per million, 460 experiments

uuuugcuguuauCGGGUGGAUCACGAUGCAAUUUugauuagaguaaugggagagaAAUUGCACGGUAUCCAUCUGUaaaccgcagga
((((((.(((..(((((((((..((.(((((((((..((..........))..)))))))))))..)))))))))..))).))))))

Structure

      u   au         CA  A         ga  agag 
uuuugc guu  CGGGUGGAU  CG UGCAAUUUu  uu    u
|||||| |||  |||||||||  || |||||||||  ||     
aggacg caa  GUCUACCUA  GC ACGUUAAag  ag    a
      c   aU         UG  -         ag  ggua 

Annotation confidence Low

Comments

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context

chrX: 140117098-140117184 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-363

Mature rno-miR-363-5p

• Accession: MIMAT0003209
• Description: Rattus norvegicus rno-miR-363-5p mature miRNA
• Sequence: 13 - CGGGUGGAUCACGAUGCAAUUU - 34
• Evidence: experimental ; SOLiD [3]

Mature rno-miR-363-3p

• Accession: MIMAT0003210
• Description: Rattus norvegicus rno-miR-363-3p mature miRNA
• Sequence: 56 - AAUUGCACGGUAUCCAUCUGU - 76
• Evidence: experimental ; cloned [1-2], SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267