Stem-loop mmu-mir-379

Accession

MI0000796

Symbol

MGI: Mir379

Description

Mus musculus mmu-mir-379 precursor miRNA mir-379

Gene
family

RF04292; mir-379

Literature search

32 open access papers mention mmu-mir-379
(170 sentences)

Sequence

818465 reads, 1411 reads per million, 89 experiments

agagaUGGUAGACUAUGGAACGUAGGcguuauguuuuugaccUAUGUAACAUGGUCCACUAACUcu
((((.((((.(((((((..(((((((((.........)).)))))))..))))))).)))).))))

Structure

    a    A       GA       -  uua 
agag UGGU GACUAUG  ACGUAGG cg   u
|||| |||| |||||||  ||||||| ||   g
ucUC AUCA CUGGUAC  UGUAUcc gu   u
    A    C       AA       a  uuu 

Annotation confidence High

Genome context

chr12: 109709060-109709125 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from mmu-mir-379

Mature mmu-miR-379-5p

• Accession: MIMAT0000743
• Description: Mus musculus mmu-miR-379-5p mature miRNA
• Sequence: 6 - UGGUAGACUAUGGAACGUAGG - 26
• Evidence: experimental ; cloned [1-4], Illumina [5,7]

Mature mmu-miR-379-3p

• Accession: MIMAT0017080
• Description: Mus musculus mmu-miR-379-3p mature miRNA
• Sequence: 43 - UAUGUAACAUGGUCCACUAACU - 64
• Evidence: experimental ; 454 [6], Illumina [7]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15538371
   A pancreatic islet-specific microRNA regulates insulin secretion
   "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
   "Nature (2004) 432:226-230


3. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


4. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


5. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


6. PubMed ID: 20668074
   Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68
   "Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H"
   "J Virol (2010) 84:10266-10275


7. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267