Stem-loop rno-mir-541

Accession

MI0003527

Description

Rattus norvegicus rno-mir-541 precursor miRNA

Literature search

5 open access papers mention rno-mir-541
(5 sentences)

Sequence

380169 reads, 3100 reads per million, 475 experiments

gccaaaaucagagAAGGGAUUCUGAUGUUGGUCACACUccaagaauuuuaaaaugAGUGGCGAACACAGAAUCCAUACucugcuuauggc
((((.((.(((((...((((((((.((((.(((((.....................))))).))))))))))))...))))).)).))))

Structure

    a  u     AAG        A    G     ACUccaaga 
gcca aa cagag   GGAUUCUG UGUU GUCAC         a
|||| || |||||   |||||||| |||| |||||         u
cggu uu gucuC   CCUAAGAC ACAA CGGUG         u
    a  c     AUA        -    G     Aguaaaauu 

Annotation confidence High

Genome context

chr6: 133892655-133892744 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-541

Mature rno-miR-541-5p

• Accession: MIMAT0003177
• Description: Rattus norvegicus rno-miR-541-5p mature miRNA
• Sequence: 14 - AAGGGAUUCUGAUGUUGGUCACACU - 38
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-541-3p

• Accession: MIMAT0017213
• Description: Rattus norvegicus rno-miR-541-3p mature miRNA
• Sequence: 56 - AGUGGCGAACACAGAAUCCAUAC - 78
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267