Stem-loop rno-mir-409a

Accession

MI0003550

Description

Rattus norvegicus rno-mir-409a precursor miRNA

Literature search

9 open access papers mention rno-mir-409a
(18 sentences)

Sequence

216596 reads, 173 reads per million, 450 experiments

gguacucggagagAGGUUACCCGAGCAACUUUGCAUcuggaggacgAAUGUUGCUCGGUGAACCCCuuuucgguauc
(((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).))))))))))))

Structure

     u       A    AC         -    - AUc 
gguac cggagag GGUU  CCGAGCAAC UUUG C   u
||||| ||||||| ||||  ||||||||| |||| |    
cuaug gcuuuuC CCAA  GGCUCGUUG AAgc g   g
     -       C    GU         U    a gag 

Annotation confidence High

Genome context

chr6: 133893419-133893495 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-409a

Mature rno-miR-409a-5p

• Accession: MIMAT0003204
• Description: Rattus norvegicus rno-miR-409a-5p mature miRNA
• Sequence: 14 - AGGUUACCCGAGCAACUUUGCAU - 36
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-409a-3p

• Accession: MIMAT0003205
• Description: Rattus norvegicus rno-miR-409a-3p mature miRNA
• Sequence: 47 - AAUGUUGCUCGGUGAACCCC - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267