Stem-loop rno-mir-374

Accession

MI0003552

Description

Rattus norvegicus rno-mir-374 precursor miRNA

Literature search

9 open access papers mention rno-mir-374
(17 sentences)

Sequence

41073 reads, 68 reads per million, 488 experiments

cucggauggAUAUAAUACAACCUGCUAAGUGuucuagcaCUUAGCACGUUGUAUUAUUAUUguccgag
(((((((((..((((((((((.((((((((((....)))))))))).))))))))))..)))))))))

Structure

         AU          C          u 
cucggaugg  AUAAUACAAC UGCUAAGUGu c
|||||||||  |||||||||| ||||||||||  
gagccugUU  UAUUAUGUUG ACGAUUCacg u
         AU          C          a 

Annotation confidence High

Genome context

chrX: 74443648-74443715 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-374

Mature rno-miR-374-5p

• Accession: MIMAT0003208
• Description: Rattus norvegicus rno-miR-374-5p mature miRNA
• Sequence: 10 - AUAUAAUACAACCUGCUAAGUG - 31
• Evidence: experimental ; cloned [1-3], Northern [2], SOLiD [4]

Mature rno-miR-374-3p

• Accession: MIMAT0017223
• Description: Rattus norvegicus rno-miR-374-3p mature miRNA
• Sequence: 40 - CUUAGCACGUUGUAUUAUUAUU - 61
• Evidence: experimental ; SOLiD [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


3. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267