Stem-loop rno-mir-188

Accession

MI0006134

Description

Rattus norvegicus rno-mir-188 precursor miRNA

Literature search

6 open access papers mention rno-mir-188
(8 sentences)

Sequence

15260 reads, 14 reads per million, 485 experiments

cccucucucaCAUCCCUUGCAUGGUGGAGGGcgagcucucugaaaacucCUCCCACAUGCAGGGUUUGCaggauggugag
......(((((((((((((((((..((((((....(.....).....))))))..)))))))).......)))).)))))

Structure

cccucu     -    -------        GU      -cgag u 
      cucaC AUCC       CUUGCAUG  GGAGGG     c c
      ||||| ||||       ||||||||  ||||||     | u
      gagug uagg       GGACGUAC  CCUCcu     g c
------     g    aCGUUUG        AC      caaaa u 

Annotation confidence High

Genome context

chrX: 16110270-16110349 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from rno-mir-188

Mature rno-miR-188-5p

• Accession: MIMAT0005301
• Description: Rattus norvegicus rno-miR-188-5p mature miRNA
• Sequence: 11 - CAUCCCUUGCAUGGUGGAGGG - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-188-3p

• Accession: MIMAT0017297
• Description: Rattus norvegicus rno-miR-188-3p mature miRNA
• Sequence: 50 - CUCCCACAUGCAGGGUUUGC - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249