Stem-loop rno-mir-329

Accession

MI0000604

Description

Rattus norvegicus rno-mir-329 precursor miRNA

Literature search

12 open access papers mention rno-mir-329
(20 sentences)

Sequence

41458 reads, 42 reads per million, 356 experiments

uguucgcuucugguaccggaagAGAGGUUUUCUGGGUCUCUGUUUCuuugaugagaaugaAACACACCCAGCUAACCUUUUUuucaguaucaaaucc
..........((((((.((((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))).)))))).....

Structure

uguucgcuuc      c            UU      CUC      u  ga 
          ugguac ggaagAGAGGUU  CUGGGU   UGUUUC uu  u
          |||||| ||||||||||||  ||||||   |||||| ||   
          acuaug cuuUUUUUCCAA  GACCCA   ACAAag aa  g
-----ccuaa      a            UC      --C      u  ga 

Annotation confidence Medium

Comments

Kim et al. cloned 40 new miRNAs from rat E18 primary cortical neurons [1]. This rat miRNA has a predicted homologue in mouse (MIR:MI0000605).

Genome context

chr6: 133862168-133862264 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-329

Mature rno-miR-329-5p

• Accession: MIMAT0017031
• Description: Rattus norvegicus rno-miR-329-5p mature miRNA
• Sequence: 23 - AGAGGUUUUCUGGGUCUCUGUUUC - 46
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-329-3p

• Accession: MIMAT0000566
• Description: Rattus norvegicus rno-miR-329-3p mature miRNA
• Sequence: 61 - AACACACCCAGCUAACCUUUUU - 82
• Evidence: experimental ; cloned [1], Northern [1], SOLiD [2]

References

1. PubMed ID: 14691248
   Identification of many microRNAs that copurify with polyribosomes in mammalian neurons
   "Kim J, Krichevsky A, Grad Y, Hayes GD, Kosik KS, Church GM, Ruvkun G"
   "Proc Natl Acad Sci U S A (2004) 101:360-365


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249