Stem-loop rno-mir-215

Accession

MI0003482

Description

Rattus norvegicus rno-mir-215 precursor miRNA

Literature search

10 open access papers mention rno-mir-215
(29 sentences)

Sequence

32634879 reads, 33463 reads per million, 490 experiments

gguguacaggacaAUGACCUAUGAUUUGACAGACAguguggcucnnugcgugugucugucauucuguaggccaauauucuguaugucucuccuccuuacaa
(((((((((((...((.(((((((..(((((((((.....((.....))...))))))))).)).))))).))...)))))))))))..............

Structure

--------------           caA  A     -  UU         gugug  u 
              gguguacagga   UG CCUAU GA  UGACAGACA     gc c
              |||||||||||   || ||||| ||  |||||||||     || n
              cuguaugucuu   ac ggaug cu  acugucugu     cg n
aacauuccuccucu           aua  c     u  -u         --gug  u 

Annotation confidence High

Genome context

Unknown

Mature rno-miR-215

• Accession: MIMAT0003118
• Description: Rattus norvegicus rno-miR-215 mature miRNA
• Sequence: 14 - AUGACCUAUGAUUUGACAGACA - 35
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267