Stem-loop rno-mir-215

Accession

MI0003482

Description

Rattus norvegicus rno-mir-215 precursor miRNA

Literature search

58 open access papers mention rno-mir-215
(105 sentences)

Sequence

33563233 reads, 38558.0 reads per million, 501 experiments

gguguacaggacaAUGACCUAUGAUUUGACAGACAguguggcucnnugcgugugUCUGUCAUUCUGUAGGCCAAUAUucuguaugucucuccuccuuacaa
(((((((((((...((.(((((((..(((((((((.....((.....))...))))))))).)).))))).))...)))))))))))..............

Structure

--------------           caA  A     -  UU         gugug  u 
              gguguacagga   UG CCUAU GA  UGACAGACA     gc c
              |||||||||||   || ||||| ||  |||||||||     || n
              cuguaugucuU   AC GGAUG CU  ACUGUCUgu     cg n
aacauuccuccucu           AUA  C     U  -U         --gug  u 

Annotation confidence High

Genome context

Unknown

Mature rno-miR-215-5p

• Accession: MIMAT0003118
• Description: Rattus norvegicus rno-miR-215-5p mature miRNA
• Sequence: 14 - AUGACCUAUGAUUUGACAGACA - 35
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-215-3p

• Accession: MIMAT0061422
• Description: Rattus norvegicus rno-miR-215-3p mature miRNA
• Sequence: 55 - UCUGUCAUUCUGUAGGCCAAUAU - 77
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267