Stem-loop rno-mir-377

Accession

MI0003487

Description

Rattus norvegicus rno-mir-377 precursor miRNA

Literature search

14 open access papers mention rno-mir-377
(102 sentences)

Sequence

6069 reads, 8 reads per million, 272 experiments

cuugagcAGAGGUUGCCCUUGGUGAAUUCgcuuuauugauguUGAAUCACACAAAGGCAACUUUUgguugag
(((((.(((((((((((.(((((((.(((((.........).)))))))).))).))))))))))).)))))

Structure

     g           C   -    A    - uuu 
cuuga cAGAGGUUGCC UUG GUGA UUCg c   a
||||| ||||||||||| ||| |||| |||| |   u
gaguu gUUUUCAACGG AAC CACU AAGU g   u
     g           A   A    -    u uag 

Annotation confidence High

Genome context

chr6: 133890690-133890761 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from rno-mir-377

Mature rno-miR-377-5p

• Accession: MIMAT0017203
• Description: Rattus norvegicus rno-miR-377-5p mature miRNA
• Sequence: 8 - AGAGGUUGCCCUUGGUGAAUUC - 29
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-377-3p

• Accession: MIMAT0003123
• Description: Rattus norvegicus rno-miR-377-3p mature miRNA
• Sequence: 43 - UGAAUCACACAAAGGCAACUUUU - 65
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267