Stem-loop rno-mir-224

Accession

MI0003483

Description

Rattus norvegicus rno-mir-224 precursor miRNA

Literature search

11 open access papers mention rno-mir-224
(82 sentences)

Sequence

5603 reads, 7 reads per million, 357 experiments

gggcuuuCAAGUCACUAGUGGUUCCGUUUaguagaugguuuuugcauuguuucaAAAUGGUGCCCUAGUGACUACAaagccc
(((((((..(((((((((.(((.((((((.(..((((.......))))....).)))))).))))))))))))..)))))))

Structure

       CA         U   U      a --ua    gu 
gggcuuu  AGUCACUAG GGU CCGUUU g    gaug  u
|||||||  ||||||||| ||| |||||| |    ||||  u
cccgaaA  UCAGUGAUC CCG GGUAAA c    uuac  u
       CA         -   U      a uuug    gu 

Annotation confidence Medium

Genome context

chrX: 152223754-152223835 [-]

Mature rno-miR-224-5p

• Accession: MIMAT0003119
• Description: Rattus norvegicus rno-miR-224-5p mature miRNA
• Sequence: 8 - CAAGUCACUAGUGGUUCCGUUU - 29
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-224-3p

• Accession: MIMAT0017200
• Description: Rattus norvegicus rno-miR-224-3p mature miRNA
• Sequence: 55 - AAAUGGUGCCCUAGUGACUACA - 76
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267