Stem-loop rno-mir-421

Accession

MI0001423

Description

Rattus norvegicus rno-mir-421 precursor miRNA

Literature search

34 open access papers mention rno-mir-421
(74 sentences)

Sequence

129023 reads, 134.0 reads per million, 502 experiments

cacacuguaggcCUCAUUAAAUGUUUGUUGAAUGaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGCcugcucugug
((((..((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..))))

Structure

    cu      -    UUA            A   aaa 
caca  guaggc CUCA   AAUGUUUGUUGA UGa   a
||||  |||||| ||||   |||||||||||| |||   a
gugu  cgucCG GGGU   UUACAGACAACU Acu   u
    cu      C    UAA            -   aag 

Annotation confidence Medium

Genome context

chrX: 74443492-74443570 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-421

Mature rno-miR-421-5p

• Accession: MIMAT0001320
• Description: Rattus norvegicus rno-miR-421-5p mature miRNA
• Sequence: 13 - CUCAUUAAAUGUUUGUUGAAUG - 34
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-421-3p

• Accession: MIMAT0017175
• Description: Rattus norvegicus rno-miR-421-3p mature miRNA
• Sequence: 47 - AUCAACAGACAUUAAUUGGGCGC - 69
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 15345052
   Microarray analysis of microRNA expression in the developing mammalian brain
   Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
   Genome Biol (2004) 5:R68