miRBase entry: rno-mir-10b

Stem-loop rno-mir-10b


Accession
MI0000842
Description
Rattus norvegicus rno-mir-10b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
28 open access papers mention rno-mir-10b
(146 sentences)

Sequence

73577738 reads, 56538 reads per million, 508 experiments
ccaaaguuguaacguugucuauauauaCCCUGUAGAACCGAAUUUGUGUgguacccacauagucACAGAUUCGAUUCUAGGGGAAuauauggucgaugcaaaaacuuca
...(((((....(((((.((((((((.((((.(((((.(((((((((((((...))))......))))))))).))))))))).)))))))).)))))....)))))..

Structure
cca     guaa     u        a    G     C         ------    u 
   aaguu    cguug cuauauau CCCU UAGAA CGAAUUUGU      GUgg  
   |||||    ||||| |||||||| |||| ||||| |||||||||      |||| a
   uucaa    guagc gguauauA GGGG AUCUU GCUUAGACA      cacc  
-ac     aaac     u        A    -     A         cugaua    c 


Annotation confidence Not enough data
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Genome context
chr3: 61647978-61648086 [+]

Database links

Mature rno-miR-10b-5p

Accession MIMAT0000783
Description Rattus norvegicus rno-miR-10b-5p mature miRNA
Sequence 28 - CCCUGUAGAACCGAAUUUGUGU - 49
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-10b-3p

Accession MIMAT0017092
Description Rattus norvegicus rno-miR-10b-3p mature miRNA
Sequence 65 - ACAGAUUCGAUUCUAGGGGAA - 85
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249