miRBase entry: rno-mir-23a

Stem-loop rno-mir-23a


Accession
MI0000852
Description
Rattus norvegicus rno-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
48 open access papers mention rno-mir-23a
(294 sentences)

Sequence

459756 reads, 1039 reads per million, 498 experiments
cggccggcuGGGGUUCCUGGGGAUGGGAUUUgaugccagucacaaAUCACAUUGCCAGGGAUUUCCaacugaccc
.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).

Structure
c  c   c     -       G    G      a  c 
 gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
 || ||| ||||| ||||||| |||| |||||| || a
 cc guc aCCUU AGGGACC UUAC CUAaac ac g
c  a   a     U       G    A      -  u 


Annotation confidence High
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Genome context
chr19: 25318582-25318656 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-23a-5p

Accession MIMAT0004712
Description Rattus norvegicus rno-miR-23a-5p mature miRNA
Sequence 10 - GGGGUUCCUGGGGAUGGGAUUU - 31
Evidence experimental
cloned [2], SOLiD [3]

Mature rno-miR-23a-3p

Accession MIMAT0000792
Description Rattus norvegicus rno-miR-23a-3p mature miRNA
Sequence 46 - AUCACAUUGCCAGGGAUUUCC - 66
Evidence experimental
cloned [1-2], SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249