miRBase entry: rno-mir-23b

Stem-loop rno-mir-23b


Accession
MI0000853
Description
Rattus norvegicus rno-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
39 open access papers mention rno-mir-23b
(223 sentences)

Sequence

487205 reads, 618 reads per million, 508 experiments
cucaccugcucuggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaaccaugaccuuggc
....((.(.(((((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))).)).)..)).

Structure
cuca  -u c  -   c   u   --          -  C      gugacu 
    cc  g uc ugg ugc uGG  GUUCCUGGCA UG UGAUUU      u
    ||  | || ||| ||| |||  |||||||||| || ||||||       
    gg  c ag acc acg aCC  UAGGGACCGU AC ACUAaa      g
---c  uu c  u   a   c   AU          U  -      auuaga 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr17: 823222-823318 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-23b-5p

Accession MIMAT0017099
Description Rattus norvegicus rno-miR-23b-5p mature miRNA
Sequence 21 - GGGUUCCUGGCAUGCUGAUUU - 41
Evidence experimental
SOLiD [4]

Mature rno-miR-23b-3p

Accession MIMAT0000793
Description Rattus norvegicus rno-miR-23b-3p mature miRNA
Sequence 58 - AUCACAUUGCCAGGGAUUACC - 78
Evidence experimental
cloned [1-3], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714