Stem-loop sequence rno-mir-26a

AccessionMI0000857 (change log)
DescriptionRattus norvegicus miR-26a stem-loop
Gene family MIPF0000043; mir-26
Literature search

54 open access papers mention rno-mir-26a
(454 sentences)

   a     -   g      u         c          g gca g 
5'  aggcc gug ccuugu caaguaauc aggauaggcu u   g u
    ||||| ||| |||||| ||||||||| |||||||||| |   |  
3'  uccgg cgc ggggca guucauugg ucuuauccgg g   c c
   g     g   a      c         u          g -aa c 
Get sequence
Deep sequencing
46206412 reads, 3.72e+04 reads per million, 514 experiments
Confidence Annotation confidence: high
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The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr8: 127714441-127714530 [+]
Database links

Mature sequence rno-miR-26a-5p

Accession MIMAT0000796
Previous IDsrno-miR-26a

16 - 


 - 37

Get sequence
Deep sequencing46205665 reads, 514 experiments
Evidence experimental; cloned [1-3], SOLiD [4]
Predicted targets

Mature sequence rno-miR-26a-3p

Accession MIMAT0017100
Previous IDsrno-miR-26a*

55 - 


 - 75

Get sequence
Deep sequencing730 reads, 259 experiments
Evidence experimental; SOLiD [4]
Predicted targets


PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:17805466 "Cloning and identification of novel microRNAs from rat hippocampus" He X, Zhang Q, Liu Y, Pan X Acta Biochim Biophys Sin (Shanghai). 39:708-714(2007).
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).