miRBase entry: rno-mir-92a-1

Stem-loop rno-mir-92a-1


Accession
MI0000878
Description
Rattus norvegicus rno-mir-92a-1 precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
35 open access papers mention rno-mir-92a-1
(180 sentences)

Sequence

3042826 reads, 3617 reads per million, 508 experiments
cuuucuacacAGGUUGGGAUUUGUCGCAAUGCUguguuucuguauagUAUUGCACUUGUCCCGGCCUGuugaguuugg
....((..((((((((((((..((.(((((((((((......)))))))))))))..))))))))))))..)).....

Structure
-cuuu  ac            UU  C           uu 
     cu  acAGGUUGGGAU  GU GCAAUGCUgug  u
     ||  ||||||||||||  || |||||||||||   
     ga  uGUCCGGCCCUG  CA CGUUAUgauau  c
gguuu  gu            UU  -           gu 


Annotation confidence High
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Genome context
chr15: 100180586-100180663 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-92a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-92a-1-5p

Accession MIMAT0017107
Description Rattus norvegicus rno-miR-92a-1-5p mature miRNA
Sequence 11 - AGGUUGGGAUUUGUCGCAAUGCU - 33
Evidence experimental
SOLiD [4]

Mature rno-miR-92a-3p

Accession MIMAT0000816
Description Rattus norvegicus rno-miR-92a-3p mature miRNA
Sequence 48 - UAUUGCACUUGUCCCGGCCUG - 68
Evidence experimental
cloned [1-3], SOLiD [4]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  4. PubMed ID: 15345052
    Microarray analysis of microRNA expression in the developing mammalian brain
    Miska EA, Alvarez-Saavedra E, Townsend M, Yoshii A, Sestan N, Rakic P, Constantine-Paton M, Horvitz HR
    Genome Biol (2004) 5:R68