miRBase entry: rno-mir-96

Stem-loop rno-mir-96


Accession
MI0000881
Description
Rattus norvegicus rno-mir-96 precursor miRNA
Gene family
MIPF0000072; mir-96

Literature search
25 open access papers mention rno-mir-96
(127 sentences)

Sequence

20327 reads, 61 reads per million, 399 experiments
ccaguaccaucugcuuggccgauUUUGGCACUAGCACAUUUUUGCUugugucucuccgcucugagCAAUCAUGUGCAGUGCCAAUAUgggaaaagcgggcugcugc
.(((((...(((((((..((.((.((((((((.((((((..(((((((((......)))...))))))..)))))))))))))).)).))..))))))).))))).

Structure
c     cca       gg  g  U        A      UU      ---   uc 
 cagua   ucugcuu  cc au UUGGCACU GCACAU  UUGCUu   gug  u
 |||||   |||||||  || || |||||||| ||||||  ||||||   |||   
 gucgu   gggcgaa  gg UA AACCGUGA CGUGUA  AACgag   cgc  c
c     --c       aa  g  U        -      CU      ucu   cu 


Annotation confidence High
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Genome context
chr4: 57463366-57463471 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-96
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-96-5p

Accession MIMAT0000818
Description Rattus norvegicus rno-miR-96-5p mature miRNA
Sequence 24 - UUUGGCACUAGCACAUUUUUGCU - 46
Evidence experimental
cloned [1-2], SOLiD [3]

Mature rno-miR-96-3p

Accession MIMAT0017110
Description Rattus norvegicus rno-miR-96-3p mature miRNA
Sequence 66 - CAAUCAUGUGCAGUGCCAAUAU - 87
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249