Stem-loop sequence rno-mir-181c

AccessionMI0000924 (change log)
DescriptionRattus norvegicus miR-181c stem-loop
Gene family MIPF0000007; mir-181
Literature search

36 open access papers mention rno-mir-181c
(207 sentences)

Stem-loop 
   ---agaacuug   a  g       gaa        cu       a     ggca 
5'            cca gg uuugggg   cauucaac  gucggug guuug    g
              ||| || |||||||   ||||||||  ||||||| |||||    c
3'            ggu cc gagcccc   gugaguug  cagcuac caaac    u
   cccaccgucaa   -  g       -ag        -c       -     agac
Get sequence
Deep sequencing
2377416 reads, 1.8e+03 reads per million, 504 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr19: 25290211-25290316 [-]
intergenic
Clustered miRNAs
< 10kb from rno-mir-181c
rno-mir-181cchr19: 25290211-25290316 [-]
rno-mir-181dchr19: 25290051-25290133 [-]
Database links

Mature sequence rno-miR-181c-5p

Accession MIMAT0000857
Previous IDsrno-miR-181c
Sequence

24 -  

aacauucaaccugucggugagu

 - 45

Get sequence
Deep sequencing2086879 reads, 504 experiments
Evidence experimental; cloned [1], SOLiD [2]
Predicted targets

Mature sequence rno-miR-181c-3p

Accession MIMAT0017137
Previous IDsrno-miR-181c*
Sequence

63 -  

accaucgaccguugaguggacc

 - 84

Get sequence
Deep sequencing290529 reads, 495 experiments
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).