miRBase entry: rno-mir-181c

Stem-loop rno-mir-181c


Accession
MI0000924
Description
Rattus norvegicus rno-mir-181c precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
36 open access papers mention rno-mir-181c
(207 sentences)

Sequence

2011467 reads, 1797 reads per million, 504 experiments
agaacuugccaaggguuugggggAACAUUCAACCUGUCGGUGAGUuugggcagcucagacaaACCAUCGACCGUUGAGUGGACCccgaggccuggaacugccaccc
........(((.((.(((((((...((((((((..(((((((.(((((...........)))))))))))).))))))))..))))))).)))))...........

Structure
---agaacuug   a  g       gAA        CU       A     ggca 
           cca gg uuugggg   CAUUCAAC  GUCGGUG GUuug    g
           ||| || |||||||   ||||||||  ||||||| |||||    c
           ggu cc gagccCC   GUGAGUUG  CAGCUAC CAaac    u
cccaccgucaa   -  g       -AG        -C       -     agac 


Annotation confidence High
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Genome context
chr19: 25290211-25290316 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-181c-5p

Accession MIMAT0000857
Description Rattus norvegicus rno-miR-181c-5p mature miRNA
Sequence 24 - AACAUUCAACCUGUCGGUGAGU - 45
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-181c-3p

Accession MIMAT0017137
Description Rattus norvegicus rno-miR-181c-3p mature miRNA
Sequence 63 - ACCAUCGACCGUUGAGUGGACC - 84
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249