Stem-loop rno-mir-200b

Accession

MI0000944

Description

Rattus norvegicus rno-mir-200b precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

67 open access papers mention rno-mir-200b
(359 sentences)

Sequence

742069 reads, 904 reads per million, 434 experiments

ccaacuugggcagccguggcCAUCUUACUGGGCAGCAUUGGAuagugucugaucucUAAUACUGCCUGGUAAUGAUGACggcggagcccugcacg
.......((((..((((.(.(((((((((((((((.((((((.(........).)))))).))))))))))).)))).).)))).))))......

Structure

ccaacuu    ag    g c    -           C      u gug 
       gggc  ccgu g CAUC UUACUGGGCAG AUUGGA a   u
       ||||  |||| | |||| ||||||||||| |||||| |    
       cccg  ggcg C GUAG AAUGGUCCGUC UAAUcu u   c
-gcacgu    -a    g A    U           A      c agu 

Annotation confidence High

Genome context

chr5: 173490144-173490238 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-200b

Mature rno-miR-200b-5p

• Accession: MIMAT0017152
• Description: Rattus norvegicus rno-miR-200b-5p mature miRNA
• Sequence: 21 - CAUCUUACUGGGCAGCAUUGGA - 42
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-200b-3p

• Accession: MIMAT0000875
• Description: Rattus norvegicus rno-miR-200b-3p mature miRNA
• Sequence: 57 - UAAUACUGCCUGGUAAUGAUGAC - 79
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249