Stem-loop rno-mir-203a

Accession

MI0000945

Description

Rattus norvegicus rno-mir-203a precursor miRNA

Gene family

MIPF0000108; mir-203

Literature search

31 open access papers mention rno-mir-203a
(230 sentences)

Sequence

359300 reads, 655 reads per million, 502 experiments

gcgcgccugguccAGUGGUUCUUAACAGUUCAACaguucuguagcgcaauuGUGAAAUGUUUAGGACCACUAGacccggcgcgcacggcagcggcga
(((((((.((((.(((((((((.((((.((((.((((((......).))))))))).)))).))))))))).)))).)))))))...((....))..

Structure

-------------       u    c         U    G    A     - ug 
             gcgcgcc gguc AGUGGUUCU AACA UUCA Caguu c  u
             ||||||| |||| ||||||||| |||| |||| ||||| |   
             cgcgcgg ccaG UCACCAGGA UUGU AAGU Guuaa g  a
agcggcgacggca       c    A         U    A    -     c cg 

Annotation confidence High

Genome context

chr6: 136704961-136705057 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-203a

Mature rno-miR-203a-5p

• Accession: MIMAT0017153
• Description: Rattus norvegicus rno-miR-203a-5p mature miRNA
• Sequence: 14 - AGUGGUUCUUAACAGUUCAAC - 34
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-203a-3p

• Accession: MIMAT0000876
• Description: Rattus norvegicus rno-miR-203a-3p mature miRNA
• Sequence: 52 - GUGAAAUGUUUAGGACCACUAG - 73
• Evidence: experimental ; cloned [1], SOLiD [2]

References

1. PubMed ID: 16766679
   Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
   "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
   "Genes Dev (2006) 20:1732-1743


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249