Stem-loop sequence ath-MIR167d

AccessionMI0000975 (change log)
DescriptionArabidopsis thaliana miR167d stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

43 open access papers mention ath-MIR167d
(206 sentences)

   u      -u     aa           c  c           auc    ca  -c            u    aaacuucuuuauaauuuaugcacacacauacagcucuuaauggccacaacucaaaguuauaauuagugcaugaucucuaguuauuugacugcuuuuaauauauguuuauggauucacg 
5'  guuggu  uuuag  gcugaagcugc ag augaucuggua   gcua  ua  gacauacacaca cacu                                                                                                                      c
    ||||||  |||||  ||||||||||| || |||||||||||   ||||  ||  |||||||||||| ||||                                                                                                                       
3'  caacca  aaauc  ugacuucgacg uc uacuggaucau   ugau  au  uugugugugugu guga                                                                                                                      a
   a      cu     ac           -  c           -ga    ag  au            -    cugugugugugguguauguagauauauauaugauuauuuuugucuuaaaacuugcccaaguuuaacuacacaugguauguguuucacguacguacauuuaauacauguaugugugugu 
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Confidence Annotation confidence: not enough data
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This sequence is a predicted paralogue of the previously identified miR167 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr1: 11137539-11137915 [+]
Database links

Mature sequence ath-miR167d

Accession MIMAT0000905

18 - 


 - 39

Get sequence
Evidence experimental; cloned [2], 454 [3-4], MPSS [3], Illumina [5]


PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).