Stem-loop sequence ath-MIR167d

Accession

MI0000975 (change log)

Description

Arabidopsis thaliana miR167d stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

43 open access papers mention ath-MIR167d
(206 sentences)

Stem-loop

   u      -u     aa           c  c           auc    ca  -c            u    aaacuucuuuauaauuuaugcacacacauacagcucuuaauggccacaacucaaaguuauaauuagugcaugaucucuaguuauuugacugcuuuuaauauauguuuauggauucacg 
5'  guuggu  uuuag  gcugaagcugc ag augaucuggua   gcua  ua  gacauacacaca cacu                                                                                                                      c
    ||||||  |||||  ||||||||||| || |||||||||||   ||||  ||  |||||||||||| ||||                                                                                                                       
3'  caacca  aaauc  ugacuucgacg uc uacuggaucau   ugau  au  uugugugugugu guga                                                                                                                      a
   a      cu     ac           -  c           -ga    ag  au            -    cugugugugugguguauguagauauauauaugauuauuuuugucuuaaaacuugcccaaguuuaacuacacaugguauguguuucacguacguacauuuaauacauguaugugugugu 

Confidence

Annotation confidence: not enough data

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Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 11137539-11137915 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007B06B9_3702
• miRBase Tracker:MI0000975

Mature sequence ath-miR167d

• Accession: MIMAT0000905
• Sequence: 18 - ugaagcugccagcaugaucugg - 39
• Evidence: experimental; cloned [2], 454 [3-4], MPSS [3], Illumina [5]

References

1. PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2. PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
3. PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
4. PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).
5. PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis" Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW J Exp Bot. 61:165-177(2010).