Stem-loop sequence ath-MIR171c

AccessionMI0000990 (change log)
DescriptionArabidopsis thaliana miR171c stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

25 open access papers mention ath-MIR171c
(112 sentences)

Stem-loop 
   ugagcgcacuaucggacaucaaauacga        ug             -      uac     ug 
5'                             gauauugg  cgguucaaucaga aaaccg   ucuuu  u
                               ||||||||  ||||||||||||| ||||||   |||||   
3'                             cuauaacc  gccgaguuaguuu uuuggc   agaaa  u
   -------------------auuugcgca        gu             a      --u     uu
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Confidence Annotation confidence: not enough data
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Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1], later experimentally verified [2,3]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context
Coordinates (TAIR10; GCA_000001735.1) Overlapping transcripts
chr1: 22930089-22930204 [-]
intergenic
Database links

Mature sequence ath-miR171c-5p

Accession MIMAT0031900
Sequence

28 -  

agauauuggugcgguucaauc

 - 48

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Evidence not experimental

Mature sequence ath-miR171c-3p

Accession MIMAT0000921
Previous IDsath-miR171c
Sequence

90 -  

uugagccgugccaauaucacg

 - 110

Get sequence
Evidence experimental; cloned [2-3], Northern [2], 5'RACE [3], 454 [4-5], MPSS [4]

References

1
PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA" Jones-Rhoades MW, Bartel DP Mol Cell. 14:787-799(2004).
2
PMID:15258262 "Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis" Sunkar R, Zhu JK Plant Cell. 16:2001-2019(2004).
3
PMID:16040653 "Expression of Arabidopsis MIRNA genes" Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC Plant Physiol. 138:2145-2154(2005).
4
PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant" Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC Genome Res. 16:1276-1288(2006).
5
PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana" Rajagopalan R, Vaucheret H, Trejo J, Bartel DP Genes Dev. 20:3407-3425(2006).