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miRBase |
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Stem-loop sequence ath-MIR397a |
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Accession | MI0001015 (change log) | ||||
Description | Arabidopsis thaliana miR397a stem-loop | ||||
Gene family | MIPF0000120; MIR397 | ||||
Literature search |
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11 open access papers mention ath-MIR397a | ||||
Stem-loop |
-u u c a u g uuu g 5' gaa gaacau auugagugcagcguug uguaa uuc uuuug uucauu u ||| |||||| |||||||||||||||| ||||| ||| ||||| |||||| 3' cuu uuugua uaacucgcguugcgac auauu aag aaaau agguaa u au - u c u - --u g |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence belongs to the miR397 family of miRNAs, which are predicted to target mRNAs coding for laccases and beta-6 tubulin [1]. |
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Genome context |
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Database links |
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Mature sequence ath-miR397a |
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Accession | MIMAT0000946 |
Sequence |
11 - ucauugagugcagcguugaug - 31 |
Evidence | experimental; 5'RACE [1], PCR [1], cloned [2-3], 454 [4-5] |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:15258262
"Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis"
Plant Cell. 16:2001-2019(2004).
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3 |
PMID:16040653
"Expression of Arabidopsis MIRNA genes"
Plant Physiol. 138:2145-2154(2005).
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4 |
PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
Genome Res. 16:1276-1288(2006).
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5 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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