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miRBase |
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Stem-loop sequence osa-MIR166k |
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Accession | MI0001107 (change log) | |||||
Description | Oryza sativa miR166k stem-loop | |||||
Gene family | MIPF0000004; MIR166 | |||||
Literature search |
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74 open access papers mention osa-MIR166k | |||||
Stem-loop |
auua u uu cu a acuccgguuucuccuuuccuac 5' gguuaagggg uug gucugg cgaggc uccggg u |||||||||| ||| |||||| |||||| |||||| 3' ccaauuuccc aac cggacc gcuccg aggcuc g cgua u uu ag - gagcggccuuuaauccgcggag |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors. |
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence osa-miR166k-5p |
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Accession | MIMAT0022870 |
Sequence |
13 - gguuuguugucuggcucgagg - 33 |
Deep sequencing | 30 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence osa-miR166k-3p |
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Accession | MIMAT0001037 |
Previous IDs | osa-miR166k |
Sequence |
97 - ucggaccaggcuucaaucccu - 117 |
Deep sequencing | 31321 reads, 2 experiments |
Evidence | by similarity; MI0000201 |
Database links |
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References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:21901091
"Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors"
PLoS Pathog. 7:e1002176(2011).
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