Stem-loop osa-MIR167e

Accession

MI0001110

Description

Oryza sativa osa-MIR167e precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

82 open access papers mention osa-MIR167e
(250 sentences)

Sequence

80647 reads, 56102 reads per million, 2 experiments

ugugagagaaUGAAGCUGCCAGCAUGAUCUGguugucaggcaugagccaaaucuauccaugguguuggugguacugaaauuaccgcguuuucgagguuuuucgucgugucaacuugcgaagggaauuacggguucuugaugagcauuggugauaggaggugugggcuugguuaguagagguagaauuaugauuguucuugugaguuucaguaagaggugggagugauuggaauuuggcuccaucAGAUCAUGUUGCAGCUUCACUcucucacc
.((((((((.(((((((((.(((((((((((((.....(((....)))....(((.(((......))))))(((((((((((((.(....(((((.((...(.((.(((((...(((...(((((((...))))))).....)))....))))).)).)...)).)))))......).)))(((((.......)))))....)))))))))).......(((((.(........).))))))))))))))))))))))))))).)))))))).

Structure

u        a         C             ugucaggcaugagccaaaucuauccaugguguuggugg          ---------------------   g --guuu     g  uuu g  g     -acu   --gaa       a 
 gugagaga UGAAGCUGC AGCAUGAUCUGgu                                      uacugaaauu                     acc c      ucgag uu   c uc uguca    ugc     gggaauu  
 |||||||| ||||||||| |||||||||||||                                      ||||||||||                     ||| |      ||||| ||   | || |||||    |||     ||||||| c
 cacucucU ACUUCGACG UUGUACUAGAcua                                      augacuuuga                     ugg g      gguuc gg   g ag auagu    acg     uucuugg  
c        C         -             ---------ccucgguuuaagguuagugaggguggaga          guguucuuguuaguauuaaga   a augauu     g  ugu g  g     gguu   aguag       g 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).

Genome context

Chr2: 3742241-3742513 [-]

Mature osa-miR167e-5p

• Accession: MIMAT0001040
• Description: Oryza sativa osa-miR167e-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUG - 31
• Evidence: not_experimental

Mature osa-miR167e-3p

• Accession: MIMAT0022873
• Description: Oryza sativa osa-miR167e-3p mature miRNA
• Sequence: 245 - AGAUCAUGUUGCAGCUUCACU - 265
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176