Accession
MI0001114
Description
Oryza sativa
osa-MIR167i precursor miRNA
Gene family
MIPF0000023;
MIR167_1
Literature search
83 open access papers mention osa-MIR167i
(248 sentences)
(248 sentences)
Sequence
80782
reads,
56192
reads per million, 2 experiments
ugugagaggcUGAAGCUGCCAGCAUGAUCUGguccaugaguugcacugcugaauauauugaauucagccaggagcugcuacugcaguucugaucucgaucugcauucguuguucugagcuauguauggauuugaucgguuugaaggcauccaugucuuuaauuucaucgaucAGAUCAUGUUGCAGCUUCACUcucucacu
.((((((((.(((((((((.((((((((((((((.(((((.....(((((((((.......)))))).)))(((((((....)))))))(((((..(((((((((..(((......))).))))..))))).)))))..(((((((((....))))))))).))))).))))))))))))))))))))))).)))))))).
.((((((((.(((((((((.((((((((((((((.(((((.....(((((((((.......)))))).)))(((((((....)))))))(((((..(((((((((..(((......))).))))..))))).)))))..(((((((((....))))))))).))))).))))))))))))))))))))))).)))))))).
Structure
u c C c uugcacugcugaauauauugaauucagccaggagcugcuacugcaguuc uc -- uc gu gugagagg UGAAGCUGC AGCAUGAUCUGguc augag ugauc gaucu gcau guu u |||||||| ||||||||| |||||||||||||| ||||| ||||| ||||| |||| ||| cacucucU ACUUCGACG UUGUACUAGAcuag uacuu gcuag uuagg ugua cga c u C - c ------------------------uaauuucuguaccuacggaaguuug -u ua -u gu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).
Genome context
Chr6: 27674749-27674949 [+]
Database links
Mature osa-miR167i-5p
| Accession | MIMAT0001044 |
| Description | Oryza sativa osa-miR167i-5p mature miRNA |
| Sequence | 11 - UGAAGCUGCCAGCAUGAUCUG - 31 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR167i-3p
| Accession | MIMAT0022875 |
| Description | Oryza sativa osa-miR167i-3p mature miRNA |
| Sequence | 173 - AGAUCAUGUUGCAGCUUCACU - 193 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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