Stem-loop sequence gga-let-7a-3

Accession

MI0001171 (change log)

Description

Gallus gallus let-7a-3 stem-loop

Gene family

MIPF0000002; let-7

Literature search

53 open access papers mention gga-let-7a-3
(265 sentences)

Stem-loop

      u   gu                ---------u     u 
5' ggg gag  aguagguuguauaguu          uaggg u
   ||| |||  ||||||||||||||||          ||||| a
3' ucc uuc  ucaucuaacauaucaa          guccc u
      u   ug                uagacugucc     g 

Deep sequencing

12709579 reads, 1.52e+05 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (Gallus_gallus-5.0; GCA_000002315.3)	Overlapping transcripts
chr1: 71291481-71291556 [+]	intergenic
AADN04003343.1: 14227-14302 [-]	intergenic

Clustered miRNAs

< 10kb from gga-let-7a-3

• gga-let-7a-3: chr1: 71291481-71291556 [+]
• gga-let-7b: chr1: 71292310-71292394 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075B1C0_9031
• miRBase Tracker:MI0001171

Mature sequence gga-let-7a-5p

• Accession: MIMAT0001101
• Sequence: 4 - ugagguaguagguuguauaguu - 25
• Deep sequencing: 38180273 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS0000416056_9031
• Predicted targets:
  • TargetScanVert:gga-let-7a-5p
  • miRDB:gga-let-7a-5p

Mature sequence gga-let-7a-3p

• Accession: MIMAT0026491
• Sequence: 54 - cuauacaaucuacugucuuucc - 75
• Deep sequencing: 657 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-let-7a-3p
  • miRDB:gga-let-7a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).