miRBase entry: gga-let-7a-3

Stem-loop gga-let-7a-3


Accession
MI0001171
Description
Gallus gallus gga-let-7a-3 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
53 open access papers mention gga-let-7a-3
(278 sentences)

Sequence

6233570 reads, 73726 reads per million, 5 experiments
gggUGAGGUAGUAGGUUGUAUAGUUuuaggguuaugcccugccugucagauaaCUAUACAAUCUACUGUCUUUCCu
(((.(((((((((((((((((((((.((((((...))))))..........))))))))))))))))))))).)))

Structure
   U                     ---------u      u 
ggg GAGGUAGUAGGUUGUAUAGUU          uagggu  
||| |||||||||||||||||||||          |||||| a
uCC UUCUGUCAUCUAACAUAUCaa          gucccg  
   U                     uagacugucc      u 


Annotation confidence High
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Genome context
chr1: 71291481-71291556 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-let-7a-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-let-7a-5p

Accession MIMAT0001101
Description Gallus gallus gga-let-7a-5p mature miRNA
Sequence 4 - UGAGGUAGUAGGUUGUAUAGUU - 25
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-let-7a-3p

Accession MIMAT0026491
Description Gallus gallus gga-let-7a-3p mature miRNA
Sequence 54 - CUAUACAAUCUACUGUCUUUCC - 75
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45