Stem-loop gga-mir-92-1

Accession

MI0001179

Description

Gallus gallus gga-mir-92-1 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

18 open access papers mention gga-mir-92-1
(63 sentences)

Sequence

74694 reads, 1297 reads per million, 5 experiments

cuuucuacacAGGUUGGGAUCAGUUGCAAUGCUgugcguuucuguggUAUUGCACUUGUCCCGGCCUGuugagguugg
...(((..((((((((((((.(((.((((((((..((......))))))))))))).))))))))))))..)))....

Structure

-cuu   ac            C   U        gu  gu 
    ucu  acAGGUUGGGAU AGU GCAAUGCU  gc  u
    |||  |||||||||||| ||| ||||||||  ||   
    gga  uGUCCGGCCCUG UCA CGUUAUgg  ug  u
gguu   gu            U   -        --  uc 

Annotation confidence High

Genome context

chr1: 148023263-148023340 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-92-1

Mature gga-miR-92-3p

• Accession: MIMAT0001109
• Description: Gallus gallus gga-miR-92-3p mature miRNA
• Sequence: 48 - UAUUGCACUUGUCCCGGCCUG - 68
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-92-5p

• Accession: MIMAT0026495
• Description: Gallus gallus gga-miR-92-5p mature miRNA
• Sequence: 11 - AGGUUGGGAUCAGUUGCAAUGCU - 33
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45