miRBase entry: gga-mir-15a

Stem-loop gga-mir-15a


Accession
MI0001186
Description
Gallus gallus gga-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
17 open access papers mention gga-mir-15a
(158 sentences)

Sequence

5939 reads, 73 reads per million, 5 experiments
ccuuggcauaacgUAGCAGCACAUAAUGGUUUGUggguuuugaaaaggugcaggccauauugugcugccucaaaaauacaagg
(((((.......(..((((((((..((((((((((.............))))))))))..))))))))..).......)))))

Structure
     gcauaac UA        UA          gguuu 
ccuug       g  GCAGCACA  AUGGUUUGUg     u
|||||       |  ||||||||  ||||||||||     g
ggaac       c  cgucgugu  uaccggacgu     a
     auaaaaa uc        ua          ggaaa 


Annotation confidence Not enough data
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Genome context
chr1: 169399193-169399275 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-15a

Accession MIMAT0001117
Description Gallus gallus gga-miR-15a mature miRNA
Sequence 14 - UAGCAGCACAUAAUGGUUUGU - 34
Evidence experimental
cloned [2-3], Northern [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616