miRBase entry: gga-mir-30d

Stem-loop gga-mir-30d


Accession
MI0001198
Description
Gallus gallus gga-mir-30d precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
23 open access papers mention gga-mir-30d
(65 sentences)

Sequence

1240206 reads, 16716 reads per million, 5 experiments
guugcUGUAAACAUCCCCGACUGGAAGcuguagcagcuugagcuuucagucagauguuugcugc
...((.(((((((((...(((((((((((..((...))..))))))))))).))))))))).))

Structure
guu  U         CCC           gu  c 
   gc GUAAACAUC   GACUGGAAGcu  ag  
   || |||||||||   |||||||||||  || a
   cg cguuuguag   cugacuuucga  uc  
---  u         --a           gu  g 


Annotation confidence High
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Genome context
chr2: 142761260-142761323 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-30d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-30d

Accession MIMAT0001129
Description Gallus gallus gga-miR-30d mature miRNA
Sequence 6 - UGUAAACAUCCCCGACUGGAAG - 27
Evidence experimental
cloned [2]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None: