Stem-loop gga-mir-30c-2

Accession

MI0001205

Description

Gallus gallus gga-mir-30c-2 precursor miRNA

Gene family

MIPF0000005; mir-30

Literature search

21 open access papers mention gga-mir-30c-2
(65 sentences)

Sequence

135959 reads, 1744 reads per million, 5 experiments

agguacUGUAAACAUCCUACACUCUCAGCUguggaaacuaagaaagcUGGGAGAAGGCUGUUUACUCUcccu
(((....(((((((.(((...(((((((((..............))))))))).))).)))))))....)))

Structure

   uacU       U   ACA         guggaa 
agg    GUAAACA CCU   CUCUCAGCU      a
|||    ||||||| |||   |||||||||       
ucc    CAUUUGU GGA   GAGGGUcga      c
   cUCU       C   --A         aagaau 

Annotation confidence High

Genome context

chr3: 82653698-82653769 [+]

Mature gga-miR-30c-5p

• Accession: MIMAT0001137
• Description: Gallus gallus gga-miR-30c-5p mature miRNA
• Sequence: 7 - UGUAAACAUCCUACACUCUCAGCU - 30
• Evidence: experimental ; cloned [2-3], Northern [2], Illumina [4]

Mature gga-miR-30c-2-3p

• Accession: MIMAT0026515
• Description: Gallus gallus gga-miR-30c-2-3p mature miRNA
• Sequence: 48 - UGGGAGAAGGCUGUUUACUCU - 68
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616


5. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45