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miRBase |
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Stem-loop sequence gga-mir-18b |
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Accession | MI0001209 (change log) | |||||||||||||
Description | Gallus gallus miR-18b stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
3 open access papers mention gga-mir-18b | |||||||||||||
Stem-loop |
cgugguc -- u c u ua --g 5' cuuguguua agg gcau uag gcagu gu acgu ||||||||| ||| |||| ||| ||||| || ||| a 3' gaacacggu ucc cgua auc cguca ua ugcg ------- cu u a c uc aga |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-miR-18b-5p |
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Accession | MIMAT0001141 |
Sequence |
15 - uaaggugcaucuagugcaguua - 36 |
Deep sequencing | 10718 reads, 5 experiments |
Evidence | experimental; cloned [2], Illumina [3] |
Predicted targets |
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Mature sequence gga-miR-18b-3p |
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Accession | MIMAT0026516 |
Sequence |
55 - uacugcccuaaaugcuccuucuggc - 79 |
Deep sequencing | 455 reads, 5 experiments |
Evidence | experimental; Illumina [3] |
Predicted targets |
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References |
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1 |
PMID:15592404
"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
Nature. 432:695-716(2004).
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2 |
PMID:18256158
"MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
J Virol. 82:4007-4015(2008).
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3 |
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Unpublished.
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4 |
PMID:18256158
"MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
J Virol. 82:4007-4015(2008).
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5 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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