Stem-loop sequence gga-mir-107

Accession

MI0001215 (change log)

Description

Gallus gallus miR-107 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

10 open access papers mention gga-mir-107
(51 sentences)

Stem-loop

   c   u      --c    u  u           c   u   a 
5'  ucu ugcuuu   agcu cu uacaguguugc uug ggc u
    ||| ||||||   |||| || ||||||||||| ||| ||| g
3'  agg acgaaa   ucgg ga auguuacgacg aac uug g
   -   u      cua    -  c           -   -   a 

Deep sequencing

537241 reads, 6.56e+03 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr6: 19401516-19401596 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000010382 ; PANK1-201; intron 4

Database links

• EntrezGene:
• RNAcentral:URS000075E2E1_9031
• miRBase Tracker:MI0001215

Mature sequence gga-miR-107-5p

• Accession: MIMAT0026520
• Sequence: 13 - agcuucuuuacaguguugccuug - 35
• Deep sequencing: 18 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-107-5p
  • miRDB:gga-miR-107-5p

Mature sequence gga-miR-107-3p

• Accession: MIMAT0001147
• Sequence: 50 - agcagcauuguacagggcuauca - 72
• Deep sequencing: 537213 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00005743AE_9031
• Predicted targets:
  • TargetScanVert:gga-miR-107-3p
  • miRDB:gga-miR-107-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).