miRBase entry: gga-mir-107

Stem-loop gga-mir-107


Accession
MI0001215
Description
Gallus gallus gga-mir-107 precursor miRNA
Gene family
MIPF0000024; mir-103

Literature search
10 open access papers mention gga-mir-107
(52 sentences)

Sequence

8337 reads, 111 reads per million, 5 experiments
cucuuugcuuucAGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAUCAaagcaugga
.(((.((((((.((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))...)))))).)))

Structure
c   u      --c    U  U           C   u   a 
 ucu ugcuuu   AGCU CU UACAGUGUUGC UUG ggc u
 ||| ||||||   |||| || ||||||||||| ||| ||| g
 agg acgaaA   UCGG GA AUGUUACGACG Aac uug g
-   u      CUA    -  C           -   -   a 


Annotation confidence Not enough data
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Genome context
chr6: 19401516-19401596 [-]

Database links

Mature gga-miR-107-3p

Accession MIMAT0001147
Description Gallus gallus gga-miR-107-3p mature miRNA
Sequence 50 - AGCAGCAUUGUACAGGGCUAUCA - 72
Evidence experimental
Illumina [2]
Database links
Predicted targets

Mature gga-miR-107-5p

Accession MIMAT0026520
Description Gallus gallus gga-miR-107-5p mature miRNA
Sequence 13 - AGCUUCUUUACAGUGUUGCCUUG - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716


  2. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45