Stem-loop gga-mir-181a-1

Accession

MI0001218

Description

Gallus gallus gga-mir-181a-1 precursor miRNA

Literature search

13 open access papers mention gga-mir-181a-1
(108 sentences)

Sequence

1403735 reads, 15577 reads per million, 5 experiments

uguagugguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuuaagugaaaACCAUCGACCGUUGAUUGUACCcuccagcuaaccauccuccuccu
....(((((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).)))))).........

Structure

-----ugua      -   uc  u A   U      CU       A    ggaau 
         gugguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
         |||||| |||  || | ||| ||||||  ||||||| ||||     u
         uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
uccuccucc      u   cc  C A   U      --       -    aguga 

Annotation confidence High

Genome context

chr8: 2005169-2005272 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-181a-1

Mature gga-miR-181a-5p

• Accession: MIMAT0001168
• Description: Gallus gallus gga-miR-181a-5p mature miRNA
• Sequence: 20 - AACAUUCAACGCUGUCGGUGAGU - 42
• Evidence: experimental ; cloned [2]

Mature gga-miR-181a-3p

• Accession: MIMAT0001150
• Description: Gallus gallus gga-miR-181a-3p mature miRNA
• Sequence: 60 - ACCAUCGACCGUUGAUUGUACC - 81
• Evidence: not_experimental

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None: