miRBase entry: gga-mir-181a-1

Stem-loop gga-mir-181a-1


Accession
MI0001218
Description
Gallus gallus gga-mir-181a-1 precursor miRNA
Gene family
MIPF0000007; mir-181

Literature search
13 open access papers mention gga-mir-181a-1
(108 sentences)

Sequence

1403735 reads, 15585 reads per million, 5 experiments
uguagugguugcuucagugAACAUUCAACGCUGUCGGUGAGUuuggaauuuaagugaaaACCAUCGACCGUUGAUUGUACCcuccagcuaaccauccuccuccu
....(((((((((..((.(.(((.((((((..(((((((.((((.............))))))))))))))))).))).).))..))).)))))).........

Structure
-----ugua      -   uc  u A   U      CU       A    ggaau 
         gugguu gcu  ag g ACA UCAACG  GUCGGUG GUuu     u
         |||||| |||  || | ||| ||||||  ||||||| ||||     u
         uaccaa cga  uc C UGU AGUUGC  CAGCUAC CAaa     a
uccuccucc      u   cc  C A   U      --       -    aguga 


Annotation confidence High
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Genome context
chr8: 2005169-2005272 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-181a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-181a-5p

Accession MIMAT0001168
Description Gallus gallus gga-miR-181a-5p mature miRNA
Sequence 20 - AACAUUCAACGCUGUCGGUGAGU - 42
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-181a-3p

Accession MIMAT0001150
Description Gallus gallus gga-miR-181a-3p mature miRNA
Sequence 60 - ACCAUCGACCGUUGAUUGUACC - 81
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None: