Stem-loop sequence gga-mir-181b-1

Accession

MI0001219 (change log)

Description

Gallus gallus miR-181b-1 stem-loop

Gene family

MIPF0000007; mir-181

Literature search

13 open access papers mention gga-mir-181b-1
(35 sentences)

Stem-loop

   --aaaa       aucaa         cug           aa  a 
5'       ggucaca     cauucauug   ucgguggguuu  cu u
         |||||||     |||||||||   |||||||||||  ||  
3'       ccggugu     guaaguaac   agucacucgaa  gg g
   uacacc       -caac         --a           ca  u 

Deep sequencing

250091 reads, 2.3e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr8: 2005358-2005446 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-181b-1

• gga-mir-181a-1: chr8: 2005169-2005272 [+]
• gga-mir-181b-1: chr8: 2005358-2005446 [+]

Database links

• EntrezGene:
• RNAcentral:URS000075D6C6_9031
• miRBase Tracker:MI0001219

Mature sequence gga-miR-181b-5p

• Accession: MIMAT0001151
• Sequence: 15 - aacauucauugcugucgguggg - 36
• Deep sequencing: 495048 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS000075B51A_9031
• Predicted targets:
  • TargetScanVert:gga-miR-181b-5p
  • miRDB:gga-miR-181b-5p

Mature sequence gga-miR-181b-1-3p

• Accession: MIMAT0026522
• Sequence: 56 - ucacugaacaaugaaugcaac - 76
• Deep sequencing: 2551 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS000075BC2C_9031
• Predicted targets:
  • TargetScanVert:gga-miR-181b-1-3p
  • miRDB:gga-miR-181b-1-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).