Stem-loop sequence gga-mir-199-2

AccessionMI0001220 (change log)
Previous IDsgga-mir-199a-1;gga-mir-199a-2
DescriptionGallus gallus miR-199-2 stem-loop
Gene family MIPF0000040; mir-199
Literature search

8 open access papers mention gga-mir-199-2
(22 sentences)

   gaagcguccggagauccu    c   gcc       u        c   ---u   ga 
5'                   gcuc guc   ccagugu cagacuac ugu    cag  c
                     |||| |||   ||||||| |||||||| |||    |||  a
3'                   cggg cag   gguuaca gucugaug aca    guc  a
   -------acgaaagggaa    u   auu       c        -   uguu   gu 
Get sequence
Deep sequencing
99380 reads, 1.36e+03 reads per million, 5 experiments
Confidence Annotation confidence: not enough data
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Chicken has two loci predicted to express miR-199. mir-199-2 (MI0001220) is homologous to mir-199a-2 in human (MI0000281) and mouse (MI0000713). mir-199-1 (MI0001245) is homologous to mir-199b in human (MI0000282) and mouse (MI0000714). The expression of chicken miR-199 has been verified experimentally [2].

Genome context
Coordinates (Gallus_gallus-5.0; GCA_000002315.3) Overlapping transcripts
chr8: 4652464-4652571 [+]
ENSGALT00000005010 ; DNM3-201; intron 14
Clustered miRNAs
< 10kb from gga-mir-199-2
gga-mir-199-2chr8: 4652464-4652571 [+]
gga-mir-214chr8: 4658313-4658422 [+]
gga-mir-214bchr8: 4658340-4658403 [-]
Database links

Mature sequence gga-miR-199-5p

Accession MIMAT0001152
Previous IDsgga-miR-199a;gga-miR-199

29 - 


 - 51

Get sequence
Deep sequencing22116 reads, 5 experiments
Evidence experimental; cloned [2], Northern [2]
Database links
Predicted targets

Mature sequence gga-miR-199-3p

Accession MIMAT0003721
Previous IDsgga-miR-199*

67 - 


 - 86

Get sequence
Deep sequencing176606 reads, 5 experiments
Evidence experimental; cloned [2], Northern [2]
Database links
Predicted targets


PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
PMID:16750530 "Identification of microRNAs from different tissues of chicken embryo and adult chicken" Xu H, Wang X, Du Z, Li N FEBS Lett. 580:3610-3616(2006).
" McBride D, Carre W, Law A, Clinton M Unpublished.