miRBase entry: gga-mir-16-2

Stem-loop gga-mir-16-2


Accession
MI0001222
Description
Gallus gallus gga-mir-16-2 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
22 open access papers mention gga-mir-16-2
(212 sentences)

Sequence

31126 reads, 387 reads per million, 5 experiments
ccuacuuguuccgcccUAGCAGCACGUAAAUAUUGGUGuaguaaaauaaaccuuaaaccCCAAUAUUAUUGUGCUGCUUAAgcguggcagagau
.....(((((.(((...(((((((((..((((((((.((..(((........))).)).))))))))..)))))))))...))).)))))....

Structure
ccuac     c   ccU         UA        U  ag   aau 
     uuguu cgc   AGCAGCACG  AAUAUUGG Gu  uaa   a
     ||||| |||   |||||||||  |||||||| ||  |||    
     gacgg gcg   UCGUCGUGU  UUAUAACC ca  auu   a
-uaga     u   AAU         UA        c  -a   cca 


Annotation confidence High
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Genome context
chr9: 22276898-22276991 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-16-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-16-5p

Accession MIMAT0001116
Description Gallus gallus gga-miR-16-5p mature miRNA
Sequence 17 - UAGCAGCACGUAAAUAUUGGUG - 38
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-16-2-3p

Accession MIMAT0031058
Description Gallus gallus gga-miR-16-2-3p mature miRNA
Sequence 60 - CCAAUAUUAUUGUGCUGCUUAA - 81
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45