miRBase entry: gga-let-7a-1

Stem-loop gga-let-7a-1


Accession
MI0001234
Description
Gallus gallus gga-let-7a-1 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
54 open access papers mention gga-let-7a-1
(283 sentences)

Sequence

6163670 reads, 72969 reads per million, 5 experiments
ugcacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucauacccgcaacugggagauaacuauacaaucuacugucuuuccuaaag
....((.(((((.(((((((((((((((((((((.....(((...(((......))).))))))))))))))))))))))))))))).))

Structure
ugca  g     U                     uuagg   aua   gc 
    cu uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccc  a
    || ||||| |||||||||||||||||||||     |||   |||   
    ga auccu uucugucaucuaacauaucaa     uag   ggg  a
----  a     -                     -----   --a   uc 


Annotation confidence High
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Genome context
chr12: 6092517-6092606 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-let-7a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-let-7a-5p

Accession MIMAT0001101
Description Gallus gallus gga-let-7a-5p mature miRNA
Sequence 13 - UGAGGUAGUAGGUUGUAUAGUU - 34
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None: