Stem-loop sequence gga-mir-301a

Accession

MI0001240 (change log)

Previous IDs

gga-mir-301

Description

Gallus gallus miR-301 stem-loop

Gene family

MIPF0000034; mir-130

Literature search

4 open access papers mention gga-mir-301a
(8 sentences)

Stem-loop

   uggcu     u    cug   c         ---      a  gucugc 
5'      gcugg aucg   gcu ugacaaugu   ugcacu cu      a
        ||||| ||||   ||| |||||||||   |||||| ||       
3'      ugacc uggu   cga acuguuaua   acguga ga      c
   ----c     u    uua   a         aua      c  aauaaa 

Deep sequencing

7670 reads, 20 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr15: 406743-406835 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-301a

• gga-mir-130a: chr15: 407968-408050 [-]
• gga-mir-301a: chr15: 406743-406835 [-]
• gga-mir-454: chr15: 400264-400384 [-]
• gga-mir-130b: chr15: 399151-399227 [-]

Database links

• EntrezGene:
• miRBase Tracker:MI0001240

Mature sequence gga-miR-301a-5p

• Accession: MIMAT0026531
• Sequence: 21 - ucugacaauguugcacuacu - 40
• Deep sequencing: 49 reads, 4 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-301a-5p
  • miRDB:gga-miR-301a-5p

Mature sequence gga-miR-301a-3p

• Accession: MIMAT0001166
• Previous IDs: gga-miR-301
• Sequence: 57 - cagugcaauaauauugucaaagcau - 81
• Deep sequencing: 7620 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-301a-3p
  • miRDB:gga-miR-301a-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).