Stem-loop gga-mir-130a

Accession

MI0001241

Description

Gallus gallus gga-mir-130a precursor miRNA

Gene family

MIPF0000034; mir-130

Literature search

10 open access papers mention gga-mir-130a
(16 sentences)

Sequence

8626 reads, 115 reads per million, 5 experiments

ugcuguuguccagaGCCCUUUUUCUGUUGUACUACUggcaauuaugaugagCAGUGCAAUAUUAAAAGGGCAUuggcuggcag
..((((((.((((.((((((((..(((((((((.((.(((....)).).)).)))))))))..)))))))).)))).))))))

Structure

ug      u    a        UC         A  g -  a 
  cuguug ccag GCCCUUUU  UGUUGUACU CU g ca u
  |||||| |||| ||||||||  ||||||||| || | ||  
  gacggu gguU CGGGAAAA  AUAACGUGA ga u gu u
--      c    A        UU         C  g a  a 

Annotation confidence High

Genome context

chr15: 407968-408050 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from gga-mir-130a

Mature gga-miR-130a-3p

• Accession: MIMAT0001167
• Description: Gallus gallus gga-miR-130a-3p mature miRNA
• Sequence: 52 - CAGUGCAAUAUUAAAAGGGCAU - 73
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-130a-5p

• Accession: MIMAT0026532
• Description: Gallus gallus gga-miR-130a-5p mature miRNA
• Sequence: 15 - GCCCUUUUUCUGUUGUACUACU - 36
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45