Stem-loop gga-mir-101-1

Accession

MI0001270

Description

Gallus gallus gga-mir-101-1 precursor miRNA

Gene family

MIPF0000046; mir-101

Literature search

14 open access papers mention gga-mir-101-1
(227 sentences)

Sequence

1460946 reads, 21064 reads per million, 5 experiments

acuauccuuuuUCGGUUAUCAUGGUACCGGUGCUguauacgugaaagGUACAGUACUGUGAUAACUGAAgaaugguggu
((((((.((((((((((((((((((((..(((((............))))).)))))))))))))))))))).))))))

Structure

      c                    CG     guaua 
acuauc uuuuUCGGUUAUCAUGGUAC  GUGCU     c
|||||| ||||||||||||||||||||  |||||      
uggugg aagAAGUCAAUAGUGUCAUG  CAUGg     g
      u                    -A     aaagu 

Annotation confidence High

Genome context

chrZ: 27510654-27510732 [+]

Mature gga-miR-101-3p

• Accession: MIMAT0001185
• Description: Gallus gallus gga-miR-101-3p mature miRNA
• Sequence: 48 - GUACAGUACUGUGAUAACUGAA - 69
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature gga-miR-101-1-5p

• Accession: MIMAT0026545
• Description: Gallus gallus gga-miR-101-1-5p mature miRNA
• Sequence: 12 - UCGGUUAUCAUGGUACCGGUGCU - 34
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45