miRBase entry: gga-mir-27b

Stem-loop gga-mir-27b


Accession
MI0001274
Description
Gallus gallus gga-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
17 open access papers mention gga-mir-27b
(35 sentences)

Sequence

143524 reads, 1634 reads per million, 5 experiments
accucucuggugaggugcAGAGCUUAGCUGAUUGGUGAACAgugauuguuucccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggug
((((((((....(((((((((((((((((.((((.(((((((.((.........)).))))))))))))))))))))))))))))..)))).)))).

Structure
-    -    ggug                 G    G       u  uug 
 accu cucu    aggugcAGAGCUUAGCU AUUG UGAACAg ga   u
 |||| ||||    ||||||||||||||||| |||| ||||||| ||   u
 ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu cu   u
g    a    --ag                 -    -       u  ccc 


Annotation confidence High
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Genome context
chrZ: 41649402-41649498 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from gga-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-27b-3p

Accession MIMAT0001187
Description Gallus gallus gga-miR-27b-3p mature miRNA
Sequence 61 - UUCACAGUGGCUAAGUUCUGC - 81
Evidence experimental
cloned [2], Illumina [3]
Database links
Predicted targets

Mature gga-miR-27b-5p

Accession MIMAT0026547
Description Gallus gallus gga-miR-27b-5p mature miRNA
Sequence 19 - AGAGCUUAGCUGAUUGGUGAACA - 41
Evidence experimental
Illumina [3]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015

  3. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45